Installation
1.1 What can NovoDeblur do?
1.2 System requirements.
1.3 Installation.
1.4 Activating your license.
1.5 Starting NovoDeblur.
1.6 Initial setup during first program start.
1.7 Environment and system variables.
Working with the graphical user interface (NovoDeblur GUI)
2.1 Scheduling deconvolutions
2.2 How to run deconvolution jobs
2.3 Visualizing and inspecting your deconvolution results
2.4 Description of the main NovoDeblur GUI-components
2.4.1 The NovoDeblur GUI window
2.4.2 The deconvolution window
2.4.3 The image inspector
2.4.4 The result windows
2.4.5 The preferences dialog window
The NovoDeblur command line interface
3.1 The NovoDeblur command prompt
3.2 The bfdeconv tool
3.3 The cfdeconv tool
3.4 The lsdeconv tool
3.5 The psfdeconv tool
3.6 The sfdeconv tool
3.7 The checkGPU tool
3.8 The convert2OME tool
3.9 The histogram3d tool
3.10 The imageextractor tool
3.11 The PSFextractor tool
NovoDeblur plugins
4.1 The contrast limited histogram equilibration (CLAHE) plugin
4.2 The unsharp masking plugin
4.3 The destriper plugin
4.4 The destriper plugin
4.4 The color channel combiner plugin
4.5 The PSF extractor plugin
Performing an example deconvolution (demo mouse embryo)
5.1 Downloading and extracting the demo data set
5.2 Example deconvolution using NovoDeblur GUI
5.3 Example deconvolution using the command line interface
Sample Images
Example 1: Immune-stained mouse embryo (light sheet)
Example 2: Multi-stained mouse embryo (light sheet)
Example 3: GFP expressing neocortex of a mouse (light sheet)
Example 4: GFP expressing neurons in the neocortex of a mouse (confocal microscopy)
Example 5: Double stained neurons in a mouse hippocampus (light sheet)
Example 6: Faceted eye of a fruit fly (confocal microscopy)
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